Question
Why is the disk space reported different when running du vs df?
Answer
This question comes up quite often. The file system allocates disk blocks in the file system to record its data. This data is referred to as metadata which is not visible to most user-level programs (such as du). Examples of metadata are inodes, disk maps, indirect blocks, and superblocks.
The du command is a user-level program that isn't aware of filesystem metadata, while df looks at the filesystem disk allocation maps and is aware of file system metadata. df obtains true filesystem statistics, whereas du sees only a partial picture.
There are many causes on why the disk space used or available when running the du or df commands differs.
Perhaps the most common is deleted files. Files that have been deleted may still be open by at least one process. The entry for such files is removed from the associated directory, which makes the file inaccessible. Therefore the command du which only counts files, does not take thes files into account and comes up with a smaller value. As long as a process still has the deleted file in use, however, the associated blocks are not yet released in the file system, so df which works at the kernel level, correctly displays these as occupied. You can find out if this is the case by running the following:
lsof | grep '(deleted)'
The fix for this issue would be to restart the services that still have those deleted files open.
The second most common cause is if you have a partition or drive mounted on top of a directory with the same name. For example if you have a directory under / called backup which contains data and then you mount a new drive on top of that directory and label it /backup but it contains no data then the space used will show up with the df command even though the du command shows no files.
To determine if there are any files or directories hidden under an active mount point, you can try using a bind-mount to mount your / filesystem which will enable me to inspect underneath other mount points. Note, this is recommended only for experienced system administrators.
mkdir /tmp/tmpmnt
mount -o bind //tmp/tmpmnt
du /tmp/tmpmnt
After you have confirmed that this is the issue, the bind mount can be removed by running:
umount /tmp/tmpmnt/
rmdir /tmp/tmpmnt
Another possible cause might be filesystem corruption. If this is suspected, please make sure you have good backups, and at your convenience, please unmount the filesystem and run an fsck.
Again, this should be done by experienced system administrators.
You can also check the calculation by running:
strace -e statfs df /
This will give you output similar to:
statfs("/", {f_type=XFS_SB_MAGIC, f_bsize=4096, f_blocks=20968699, f_bfree=17420469,
f_bavail=17420469, f_files=41942464, f_ffree=41509188, f_fsid={val=[64769, 0]},
f_namelen=255, f_frsize=4096, f_flags=ST_VALID|ST_RELATIME}) = 0
Filesystem 1K-blocks Used Available Use% Mounted on
/dev/vda1 83874796 14192920 69681876 17% /
+++ exited with 0 +++
Notice the difference between f_bfree and f_bavail? This is the free blocks in the filesystem vs free blocks available to an unprivileged user. The used column is merely a calculation between the two.
83874796 - 69681876 = 14192920
Final note. The Show Current Disk Usage page in WHM, obtains the information directly from the filesystem.