The servers system package manager, YUM failed
Hello,
While running easy apache Yum is giving error
!! The server"s system package manager, "YUM", failed. !!
tried the below fixes:
-----------
Solution :
Run yum update command, if all above cmds did not resolve the error: # yum update If yum update failed it may possible that the RPM database is corruption it can be resolved by running below commands
----------- Still getting the same error. I have also ran upcp, getting this error
# yum clean headers
# yum clean packages
# yum clean metadata
# yum clean dbcache
# yum clean allRun yum update command, if all above cmds did not resolve the error: # yum update If yum update failed it may possible that the RPM database is corruption it can be resolved by running below commands
# rm -f /var/lib/rpm/__db.*
# rpm -vv "rebuilddb
# yum updaterpm -e --justdb --nodeps openssl.i386
yum install openssl----------- Still getting the same error. I have also ran upcp, getting this error
==============================
[20140701.104608] [25848] Error: Package: clamav-0.98.3-1.el5.x86_64 (epel)
[20140701.104608] [25848] Requires: libcurl.so.3()(64bit)
[20140701.104608] [25848] You could try using --skip-broken to work around the problem
[20140701.104609] [25848] ** Found 2 pre-existing rpmdb problem(s), 'yum check' output follows:
[20140701.104609] [25848] frontpage-2002-SR1.2.i386 has missing requires of libexpat.so.0
[20140701.104609] [25848] sendmail-cf-8.14.4-8.el6.noarch has missing requires of sendmail = ('0', '8.14.4', '8.el6')
[20140701.104609] [25848] checkyum version 21.1
================================================================
# yum check
Loaded plugins: fastestmirror
MySQL51-client-5.1.73-1.cp1136.x86_64 is a duplicate with MySQL51-client-5.1.72-2.cp1136.x86_64
MySQL51-server-5.1.73-1.cp1136.x86_64 is a duplicate with MySQL51-server-5.1.72-2.cp1136.x86_64
cpanel-ckeditor-4.2.1-2.cp1140.noarch is a duplicate with cpanel-ckeditor-4.2-3.cp1140.noarch
cpanel-clamav-0.98.1-2.cp1140.x86_64 is a duplicate with cpanel-clamav-0.98-4.cp1140.x86_64
cpanel-clamav-virusdefs-0.98-4.cp1140.x86_64 is obsoleted by cpanel-clamav-virusdefs-0.98-4.cp1140.x86_64
cpanel-clamav-virusdefs-0.98-4.cp1140.x86_64 is obsoleted by cpanel-clamav-virusdefs-0.98.1-2.cp1140.x86_64
cpanel-clamav-virusdefs-0.98.1-2.cp1140.x86_64 is a duplicate with cpanel-clamav-virusdefs-0.98-4.cp1140.x86_64
cpanel-clamav-virusdefs-0.98.1-2.cp1140.x86_64 is obsoleted by cpanel-clamav-virusdefs-0.98-4.cp1140.x86_64
cpanel-clamav-virusdefs-0.98.1-2.cp1140.x86_64 is obsoleted by cpanel-clamav-virusdefs-0.98.1-2.cp1140.x86_64
cpanel-libxml2-2.9.1-1.cp1136.x86_64 is a duplicate with cpanel-libxml2-2.7.7-2.cp1136.x86_64
cpanel-perl-514-Locale-Maketext-1.23-1.cp1136.x86_64 is a duplicate with cpanel-perl-514-Locale-Maketext-1.22-1.cp1136.x86_64
cpanel-perl-514-Locales-0.32-1.cp1136.x86_64 is a duplicate with cpanel-perl-514-Locales-0.26-1.cp1136.x86_64
cpanel-perl-514-Mail-SpamAssassin-3.003002-4.cp1136.x86_64 is a duplicate with cpanel-perl-514-Mail-SpamAssassin-3.003002-3.cp1136.x86_64
cpanel-perl-514-Module-Want-0.6-1.cp1136.x86_64 is a duplicate with cpanel-perl-514-Module-Want-0.4-1.cp1136.x86_64
exim-4.82-3.cp1136.x86_64 is a duplicate with exim-4.82-2.cp1136.x86_64
frontpage-2002-SR1.2.i386 has missing requires of libexpat.so.0
sendmail-cf-8.14.4-8.el6.noarch has missing requires of sendmail = ('0', '8.14.4', '8.el6')
Error: check all
=======================-
Hello :) The output shows that you are using the EPEL repo with YUM in the /etc/yum.repos.d directory. This is not standard. Are you using this repo for a specific package? Thank you. 0 -
Hello, How can I change it to standard one. Now when I execute yum update I get following output. ---> Package shared-mime-info.x86_64 0:0.70-4.el6 will be installed --> Finished Dependency Resolution Error: Package: clamav-0.98.3-1.el5.x86_64 (epel) Requires: libcurl.so.3()(64bit) You could try using --skip-broken to work around the problem ** Found 2 pre-existing rpmdb problem(s), 'yum check' output follows: frontpage-2002-SR1.2.i386 has missing requires of libexpat.so.0 sendmail-cf-8.14.4-8.el6.noarch has missing requires of sendmail = ('0', '8.14.4', '8.el6') 0 -
Hello, cPanel fixed it. ================ [13:48:04 server root@5176965 ~]cPs# rpm -e --justdb --nodeps libstdc++-4.4.7-3.el6.i686 Once I did that, I ran /scripts/easyapache --build and it built without error. Distilled successfully !! Done executing '/scripts/posteasyapache' !! !! Verbose logfile is at '/usr/local/cpanel/logs/easy/apache/build.1404247997' !! [14:15:57 server root@5176965 ~]cPs# ========== 0 -
I am happy to see the issue has been resolved. Thank you for updating us with the outcome. 0 -
I tried to recompile also apache with easyapache and i got the same error "The server's system package manager, 'YUM', failed." Some details from the console that might help [QUOTE] !! The server's system package manager, 'YUM', failed. !! !! direct ensure() call will be used (does not support get_command_arrayref_only): pkglist = 'automake19 gettext libstdc++.x86_64 libpng-devel openssl libpng-dev zlib-devel autoconf261 libidn-devel gmake libidn libXpm openssl-devel automake coreutils patch libltdl3-devel libltdl libopenssl0.9.7-static-devel icu-dev libtool-ltdl-devel libicu sed libXpm-devel lsof libenchant-dev libXpm-dev enchant-devel krb5-dev flex glibc-dev expat-dev krb5-devel enchant-dev libstdc++-devel.x64_64 xorg-x11-devel libtool-ltdl libssl-dev bzip2-devel pam-devel icu-devel libenchant-devel libopenssl0-devel zlib1-devel expat-devel libicu-dev libopenssl0-dev gcc-c++ expat glibc-devel libenchant zlib libicu-devel bison libjpeg-devel libtool-libltdl-devel libtool openssl-dev libopenssl0 libz-devel bzip2-libs libjpeg-dev pam-dev libopenssl0.9.7-devel fileutils libltdl-devel e2fsprogs-devel icu ca_root_nss make libstdc++-dev.x86_64 libX11-devel libstdc++-devel.x86_64 gd cpp xorg-x11-dev gcc enchant ssl-dev lex autoconf' !! !! Please visit 0 -
Any solution on the issue ? Thanks! 0 -
[quote="rainbowpower, post: 1826262">Any solution on the issue ? Thanks!
Hi, As root on your server, can you runyum update
Please paste the output here. This should let us know how Yum failed.0 -
Hello , i have an error with easyapache when i want to customize profile or bulid !! The server's system package manager, 'YUM', failed. !! I tried to use this solution - Removed link, threads merged - but i got same problem root@server [~]# yum update Loaded plugins: fastestmirror Setting up Update Process Loading mirror speeds from cached hostfile * base: mirror.san.fastserv.com * updates: centos.unixheads.org Resolving Dependencies --> Running transaction check ---> Package gcc.x86_64 0:4.4.7-11.el6 will be updated ---> Package gcc.x86_64 0:4.4.7-16.el6 will be an update ---> Package gcc-c++.x86_64 0:4.4.7-11.el6 will be updated ---> Package gcc-c++.x86_64 0:4.4.7-16.el6 will be an update ---> Package glibc.i686 0:2.12-1.149.el6_6.9 will be updated ---> Package glibc.i686 0:2.12-1.166.el6_7.1 will be an update ---> Package glibc-common.x86_64 0:2.12-1.149.el6_6.9 will be updated ---> Package glibc-common.x86_64 0:2.12-1.166.el6_7.1 will be an update ---> Package libstdc++.i686 0:4.4.7-11.el6 will be updated ---> Package libstdc++.i686 0:4.4.7-16.el6 will be an update ---> Package libstdc++-devel.x86_64 0:4.4.7-11.el6 will be updated ---> Package libstdc++-devel.x86_64 0:4.4.7-16.el6 will be an update ---> Package libxml2.i686 0:2.7.6-17.el6_6.1 will be updated ---> Package libxml2.i686 0:2.7.6-20.el6 will be an update ---> Package ncurses-libs.i686 0:5.7-3.20090208.el6 will be updated ---> Package ncurses-libs.i686 0:5.7-4.20090207.el6 will be an update ---> Package python-libs.x86_64 0:2.6.6-52.el6 will be updated ---> Package python-libs.x86_64 0:2.6.6-64.el6 will be an update ---> Package rpm.x86_64 0:4.8.0-38.el6_6 will be updated ---> Package rpm.x86_64 0:4.8.0-47.el6 will be an update ---> Package yum.noarch 0:3.2.29-60.el6.centos will be updated ---> Package yum.noarch 0:3.2.29-69.el6.centos will be an update --> Finished Dependency Resolution Dependencies Resolved ================================================================================ Package Arch Version Repository Size ================================================================================ Updating: gcc x86_64 4.4.7-16.el6 base 10 M gcc-c++ x86_64 4.4.7-16.el6 base 4.7 M glibc i686 2.12-1.166.el6_7.1 updates 4.3 M glibc-common x86_64 2.12-1.166.el6_7.1 updates 14 M libstdc++ i686 4.4.7-16.el6 base 302 k libstdc++-devel x86_64 4.4.7-16.el6 base 1.6 M libxml2 i686 2.7.6-20.el6 base 801 k ncurses-libs i686 5.7-4.20090207.el6 base 249 k python-libs x86_64 2.6.6-64.el6 base 5.3 M rpm x86_64 4.8.0-47.el6 base 904 k yum noarch 3.2.29-69.el6.centos base 1.0 M Transaction Summary ================================================================================ Upgrade 11 Package(s) Total download size: 43 M Is this ok [y/N]: y Downloading Packages: (1/11): gcc-4.4.7-16.el6.x86_64.rpm | 10 MB 00:00 (2/11): gcc-c++-4.4.7-16.el6.x86_64.rpm | 4.7 MB 00:00 (3/11): glibc-2.12-1.166.el6_7.1.i686.rpm | 4.3 MB 00:00 (4/11): glibc-common-2.12-1.166.el6_7.1.x86_64.rpm | 14 MB 00:01 (5/11): libstdc++-4.4.7-16.el6.i686.rpm | 302 kB 00:00 (6/11): libstdc++-devel-4.4.7-16.el6.x86_64.rpm | 1.6 MB 00:00 (7/11): libxml2-2.7.6-20.el6.i686.rpm | 801 kB 00:00 (8/11): ncurses-libs-5.7-4.20090207.el6.i686.rpm | 249 kB 00:00 (9/11): python-libs-2.6.6-64.el6.x86_64.rpm | 5.3 MB 00:00 (10/11): rpm-4.8.0-47.el6.x86_64.rpm | 904 kB 00:00 (11/11): yum-3.2.29-69.el6.centos.noarch.rpm | 1.0 MB 00:00 -------------------------------------------------------------------------------- Total 11 MB/s | 43 MB 00:04 Running rpm_check_debug Running Transaction Test Transaction Test Succeeded Running Transaction Updating : libstdc++-devel-4.4.7-16.el6.x86_64 1/22 Error unpacking rpm package libstdc++-devel-4.4.7-16.el6.x86_64 error: unpacking of archive failed on file /usr/lib/gcc: cpio: chown Updating : glibc-common-2.12-1.166.el6_7.1.x86_64 2/22 Error unpacking rpm package glibc-common-2.12-1.166.el6_7.1.x86_64 error: unpacking of archive failed on file /usr/lib/locale/locale-archive.tmpl;55da10e4: cpio: open Updating : glibc-2.12-1.166.el6_7.1.i686 3/22 Error unpacking rpm package glibc-2.12-1.166.el6_7.1.i686 error: unpacking of archive failed on file /usr/lib/gconv: cpio: chown Updating : rpm-4.8.0-47.el6.x86_64 4/22 Error unpacking rpm package rpm-4.8.0-47.el6.x86_64 error: unpacking of archive failed on file /usr/lib/rpm: cpio: chown Updating : gcc-4.4.7-16.el6.x86_64 5/22 Error unpacking rpm package gcc-4.4.7-16.el6.x86_64 error: unpacking of archive failed on file /usr/lib/gcc: cpio: chown Updating : libstdc++-4.4.7-16.el6.i686 6/22 Error unpacking rpm package libstdc++-4.4.7-16.el6.i686 error: unpacking of archive failed on file /usr/lib/libstdc++.so.6.0.13: cpio: rename Updating : gcc-c++-4.4.7-16.el6.x86_64 7/22 Error unpacking rpm package gcc-c++-4.4.7-16.el6.x86_64 error: unpacking of archive failed on file /usr/lib/gcc: cpio: chown Updating : yum-3.2.29-69.el6.centos.noarch 8/22 Error unpacking rpm package yum-3.2.29-69.el6.centos.noarch error: unpacking of archive failed on file /usr/lib/yum-plugins: cpio: chown Updating : python-libs-2.6.6-64.el6.x86_64 9/22 Error unpacking rpm package python-libs-2.6.6-64.el6.x86_64 error: unpacking of archive failed on file /usr/lib/python2.6: cpio: chown Updating : libxml2-2.7.6-20.el6.i686 10/22 Error unpacking rpm package libxml2-2.7.6-20.el6.i686 error: unpacking of archive failed on file /usr/lib/libxml2.so.2.7.6: cpio: rename Updating : ncurses-libs-5.7-4.20090207.el6.i686 11/22 Error unpacking rpm package ncurses-libs-5.7-4.20090207.el6.i686 error: unpacking of archive failed on file /usr/lib/libform.so.5.7: cpio: rename Verifying : gcc-c++-4.4.7-16.el6.x86_64 1/22 libstdc++-devel-4.4.7-11.el6.x86_64 was supposed to be removed but is not! Verifying : libstdc++-devel-4.4.7-11.el6.x86_64 2/22 glibc-2.12-1.149.el6_6.9.i686 was supposed to be removed but is not! Verifying : glibc-2.12-1.149.el6_6.9.i686 3/22 Verifying : glibc-2.12-1.166.el6_7.1.i686 4/22 python-libs-2.6.6-52.el6.x86_64 was supposed to be removed but is not! Verifying : python-libs-2.6.6-52.el6.x86_64 5/22 Verifying : python-libs-2.6.6-64.el6.x86_64 6/22 Verifying : libxml2-2.7.6-20.el6.i686 7/22 Verifying : libstdc++-4.4.7-16.el6.i686 8/22 ncurses-libs-5.7-3.20090208.el6.i686 was supposed to be removed but is not! Verifying : ncurses-libs-5.7-3.20090208.el6.i686 9/22 Verifying : rpm-4.8.0-47.el6.x86_64 10/22 gcc-c++-4.4.7-11.el6.x86_64 was supposed to be removed but is not! Verifying : gcc-c++-4.4.7-11.el6.x86_64 11/22 Verifying : gcc-4.4.7-16.el6.x86_64 12/22 Verifying : glibc-common-2.12-1.166.el6_7.1.x86_64 13/22 Verifying : yum-3.2.29-69.el6.centos.noarch 14/22 libxml2-2.7.6-17.el6_6.1.i686 was supposed to be removed but is not! Verifying : libxml2-2.7.6-17.el6_6.1.i686 15/22 Verifying : libstdc++-devel-4.4.7-16.el6.x86_64 16/22 libstdc++-4.4.7-11.el6.i686 was supposed to be removed but is not! Verifying : libstdc++-4.4.7-11.el6.i686 17/22 rpm-4.8.0-38.el6_6.x86_64 was supposed to be removed but is not! Verifying : rpm-4.8.0-38.el6_6.x86_64 18/22 gcc-4.4.7-11.el6.x86_64 was supposed to be removed but is not! Verifying : gcc-4.4.7-11.el6.x86_64 19/22 glibc-common-2.12-1.149.el6_6.9.x86_64 was supposed to be removed but is not! Verifying : glibc-common-2.12-1.149.el6_6.9.x86_64 20/22 Verifying : ncurses-libs-5.7-4.20090207.el6.i686 21/22 yum-3.2.29-60.el6.centos.noarch was supposed to be removed but is not! Verifying : yum-3.2.29-60.el6.centos.noarch 22/22 Failed: gcc.x86_64 0:4.4.7-11.el6 gcc.x86_64 0:4.4.7-16.el6 gcc-c++.x86_64 0:4.4.7-11.el6 gcc-c++.x86_64 0:4.4.7-16.el6 glibc.i686 0:2.12-1.149.el6_6.9 glibc.i686 0:2.12-1.166.el6_7.1 glibc-common.x86_64 0:2.12-1.149.el6_6.9 glibc-common.x86_64 0:2.12-1.166.el6_7.1 libstdc++.i686 0:4.4.7-11.el6 libstdc++.i686 0:4.4.7-16.el6 libstdc++-devel.x86_64 0:4.4.7-11.el6 libstdc++-devel.x86_64 0:4.4.7-16.el6 libxml2.i686 0:2.7.6-17.el6_6.1 libxml2.i686 0:2.7.6-20.el6 ncurses-libs.i686 0:5.7-3.20090208.el6 ncurses-libs.i686 0:5.7-4.20090207.el6 python-libs.x86_64 0:2.6.6-52.el6 python-libs.x86_64 0:2.6.6-64.el6 rpm.x86_64 0:4.8.0-38.el6_6 rpm.x86_64 0:4.8.0-47.el6 yum.noarch 0:3.2.29-60.el6.centos yum.noarch 0:3.2.29-69.el6.centos Complete!0 -
error: unpacking of archive failed on file /usr/lib/gcc: cpio: chown
Hello :) It's possible that part of the problem is with immutable or append-only attributes assigned to some of the files in your /usr/lib directory. Try running the lsattr command on some of the files referenced in the YUM error output to see if that's the case. EX:lsattr /usr/lib/gcc
On a test system, it shows the following output:# lsattr /usr/lib/gcc ---------------- /usr/lib/gcc/x86_64-redhat-linux
What do you see on your system? Thank you.0
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