cPanel DNS only server update issue

brendenc

• November 18, 2015 04:50

Hi All, I've got a DNS only server running on a 512Mb Digital Ocean virtual machine. I don't have any excludes for glibc etc. exclude=bind-chroot courier* dovecot* exim* filesystem httpd* mod_ssl* mydns* mysql* nsd* perl* php* proftpd* pure-ftpd* spamassassin* squirrelmail* Just wondering if anyone had any suggestions?
[2015-11-18 04:15:51 -0500] Removing: glibc-2.12-1.166.el6_7.1.x86_64 (installed) [2015-11-18 04:15:51 -0500] glibc = 2.12-1.166.el6_7.1 [2015-11-18 04:15:51 -0500] Updated By: glibc-2.12-1.166.el6_7.3.x86_64 (updates) [2015-11-18 04:15:51 -0500] glibc = 2.12-1.166.el6_7.3 [2015-11-18 04:15:51 -0500] Available: glibc-2.12-1.166.el6.i686 (base) [2015-11-18 04:15:51 -0500] glibc = 2.12-1.166.el6 [2015-11-18 04:15:51 -0500] Error: Package: glibc-common-2.12-1.149.el6_6.9.x86_64 (@updates) [2015-11-18 04:15:51 -0500] Requires: glibc = 2.12-1.149.el6_6.9 [2015-11-18 04:15:51 -0500] Removing: glibc-2.12-1.149.el6_6.9.x86_64 (@updates) [2015-11-18 04:15:51 -0500] glibc = 2.12-1.149.el6_6.9 [2015-11-18 04:15:51 -0500] Updated By: glibc-2.12-1.166.el6_7.3.x86_64 (updates) [2015-11-18 04:15:51 -0500] glibc = 2.12-1.166.el6_7.3 [2015-11-18 04:15:51 -0500] Removing: glibc-2.12-1.166.el6_7.1.x86_64 (installed) [2015-11-18 04:15:51 -0500] glibc = 2.12-1.166.el6_7.1 [2015-11-18 04:15:51 -0500] Updated By: glibc-2.12-1.166.el6_7.3.x86_64 (updates) [2015-11-18 04:15:51 -0500] glibc = 2.12-1.166.el6_7.3 [2015-11-18 04:15:51 -0500] Available: glibc-2.12-1.166.el6.i686 (base) [2015-11-18 04:15:51 -0500] glibc = 2.12-1.166.el6 [2015-11-18 04:15:51 -0500] checkyum version 22.3 [2015-11-18 04:15:56 -0500] E Sysup: Needed system RPMs were not installed: nscd, python-setuptools, xz, yum-utils [2015-11-18 04:15:56 -0500] ***** FATAL: Cannot proceed. Needed system RPMs were not installed. [2015-11-18 04:15:56 -0500] The Administrator will be notified to review this output when this script completes => Log closed Wed Nov 18 04:15:56 2015 [2015-11-18 04:15:56 -0500] 17% complete [2015-11-18 04:15:56 -0500] E Running `/usr/local/cpanel/scripts/updatenow --upcp --log=/var/cpanel/updatelogs/update.1447838101.log` failed, exited with code 18 (signal = 0)

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  brendenc

  • November 18, 2015 10:31

  Update: I removed python-devel as I found conflicts in log files and re-installed. Ran a yum-clean-transaction. Tried a fresh cpup and now have this:
  [2015-11-18 06:29:37 -0500] ***** FATAL: Tried to download 'http://httpupdate.cpanel.net/RPM/11.48/centos/6/x86_64/exim-4.86-3.cp1148.x86_64.rpm' to '/usr/local/cpanel/rpm_downloads/exim-4.86-3.cp1148.x86_64.rpm' but the file is zero bytes at /usr/local/cpanel/scripts/updatenow.static-cpanelsync line 34075. [2015-11-18 06:29:37 -0500] The Administrator will be notified to review this output when this script completes [2015-11-18 06:29:37 -0500] ***** FATAL: Failed to stage "new RPMS" because of an error: Tried to download 'http://httpupdate.cpanel.net/RPM/11.48/centos/6/x86_64/exim-4.86-3.cp1148.x86_64.rpm' to '/usr/local/cpanel/rpm_downloads/exim-4.86-3.cp1148.x86_64.rpm' but the file is zero bytes at /usr/local/cpanel/scripts/updatenow.static-cpanelsync line 34075. [2015-11-18 06:29:37 -0500] : see http://go.cpanel.net/rpmcheckfailed for more information [2015-11-18 06:29:37 -0500] The Administrator will be notified to review this output when this script completes => Log closed Wed Nov 18 06:29:37 2015 [2015-11-18 06:29:38 -0500] 17% complete [2015-11-18 06:29:38 -0500] E Running `/usr/local/cpanel/scripts/updatenow --upcp --log=/var/cpanel/updatelogs/update.1447845345.log` failed, exited with code 13 (signal = 0) => Log closed Wed Nov 18 06:29:39 2015 ------------------------------------------------------------------------------------------------------------------------------
  Starting to think there is something wrong with cPanel/WHM not my VM? Suggestions - aside from rebuilding?

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  cPanelMichael

  • November 18, 2015 15:33

  Hello :) Please post the output from the following command:
  cat /etc/cpupdate.conf /scripts/check_cpanel_rpms
  Thank you.

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  brendenc

  • November 18, 2015 19:11

  
  # cat /etc/cpupdate.conf CPANEL=stable RPMUP=daily SARULESUP=daily STAGING_DIR=/usr/local/cpanel UPDATES=daily
  No output on check_cpanel_rpms
  # /scripts/check_cpanel_rpms #
  

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  cPanelMichael

  • November 19, 2015 15:18

  Do you notice any zero-byte files in the /usr/local/cpanel/tmp/rpm_downloads/ directory? Also, are you using any custom mirrors in the /etc/cpsources.conf file (if it exists)? Thank you.

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  brendenc

  • November 22, 2015 00:59

  Negative... We ended up forcibly removing problem RPMs and then re-installing them. Then we managed to get upcp to run fine.

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  Christer Tysdal

  • November 23, 2015 14:16

  I got a similar error as well on both of mine DNS Only servers. [2015-11-23 10:03:28 -0500] E Sysup: Needed system RPMs were not installed: nscd [2015-11-23 10:03:28 -0500] ***** FATAL: Cannot proceed. Needed system RPMs were not installed. When trying to install nscd i got an dependency error telling me there is an ussue with glibc Solved it by running yum update glibc* And after yum install nscd

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  cPanelMichael

  • November 23, 2015 17:54

  I am happy to see the issue is now resolved. Thank you for updating us with the outcome.

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